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Two agents from vastly different backgrounds join forces to solve cases the FBI has labeled X-Files. Both are determined to uncover hidden truths one searching for otherworldly answers, the other for more earthbound scientific explanations.

The X-Files has been shut down and Mulder and Scully are separated. Scully finds herself teaching classes at the FBI Academy in Quantico, Virginia, while Mulder is assigned to surveillance duty.

Mulder is missing and assumed deadalthough Scully experiences a vision in which he is still alive. Yet even as they are reunited, each must deal with an additional personal loss.

The prophetic words of the alien Bounty Hunter resonate throughout the fourth season, beginning with the near death of Mulder's mother and the murder of the mysterious X.

As Mulder lies in a neurological unit, his brain under attack by a deadly onslaught of electrical impulses, Scully struggles to decipher strange symbols covering a spacecraft found submerged off West Africa's Ivory Coast.

After Mulder's disappearance, Scully returns to FBI headquarters to find Special Agent John Doggett heading up a FBI manhunt for her partner.

Aware his presence only puts Scully and William in jeopardy Mulder once again disappears but at least this time it is his own choice.